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Japan in September: Weather, Best Places & Itineraries (2026)

Written by Senior Expert Felicia|Updated: 2025-09-17

Budget travelers love to visit Japan in September. It marks the shift from hot summer to cooler autumn, with fewer crowds and potentially lower prices, though it's still typhoon season and can be humid, especially in early September.

In this guide, we'll walk you through everything you need to know about Japan in September:

  • Is September a Good Time to Visit? → Discover why this "sweet spot" month offers fewer crowds, better value, and surprisingly good weather.
  • The Weather in September → A practical, honest breakdown of early vs. late September, average temperatures, and what typhoon season really means for your trip.
  • Best Places to Visit → From Hokkaido's early autumn colors to Okinawa's lingering summer beaches, plus cultural gems like Kyoto and vibrant Tokyo.
  • What to Pack → Tips on dressing for warm, humid days and crisp, clear evenings.
  • Practical Travel Tips → Smart advice on booking, costs, and seasonal foods you won't want to miss.
  • Suggested Itineraries → Curated journeys—whether you want autumn leaves in Hokkaido, cultural treasures in Kyoto, or a hiking adventure on the Kumano Kodo.

By the end, you'll see why September is Japan's best-kept secret month—a time to enjoy culture, nature, and value all at once.

Content Preview

  • triangleIs September a Good Time to Visit Japan?
  • triangleThe Weather in September: An Honest Guide
  • triangleBest Places to Visit in Japan in September
  • triangleWhat to Pack for Your September Trip
  • trianglePractical Tips for September Travel
  • triangleSuggested Itineraries: Your Perfect September Journey
  • triangleTravel to Japan in September with 株式会社Asia Odyssey Travel Japan

Is September a Good Time to Visit Japan?

Of course it is! September in Japan is not as famous as cherry blossom season or the autumn-leaf rush. But let me tell you, the perks are huge.

Tokyo Tower view with temple
Tokyo Tower view with temple
Senso-ji Temple, Tokyo
Senso-ji Temple, Tokyo

1. You Get to Actually Enjoy the Sights (With Blissfully Few Crowds!)

This is the biggest win, hands down. Because it's "back-to-school" season worldwide, the family vacation crowds have completely cleared out. This transforms your trip from a frantic rush into a genuinely relaxing journey.

Imagine walking through the thousands of iconic red gates at Kyoto's Fushimi Inari Shrine without having to constantly dodge people. Picture yourself finding a quiet moment to reflect at a famous temple, or getting that perfect, unobstructed photo of Mount Fuji.

That's the September difference.

2. Your Wallet Will Thank You

Let's be real, travel can be expensive. But September is a "shoulder season," meaning it sits right between the summer and autumn peaks.

Airlines and hotels often have much more attractive prices than they do in, say, October or April.

It's the smart move—you get a top-tier experience without the top-tier price tag, leaving you with more to spend on amazing food and fun souvenirs.

Senso-ji Temple, Tokyo
Senso-ji Temple, Tokyo
Fushimi Inari Taisha Shrine
Fushimi Inari Taisha Shrine

3. The Weather is Just Chef's Kiss Perfect

While the first week of September can still feel a bit like summer, the month gets progressively more delightful. The crushing humidity lifts, and the air becomes fresher and drier.

By late September, you're often treated to day after day of clear blue skies and warm, comfortable sunshine that's perfect for sightseeing.

You can walk around all day without feeling like you need another shower. It's fantastic.

4. It's Time to Get Outside and Play!

This amazing weather means one thing: it's the perfect time for an outdoor adventure. Japan's incredible nature is calling your name.

The temperature is ideal for hiking and trekking, whether you want to see the very first autumn leaves in the northern mountains or explore ancient pilgrimage trails.

If you're an outdoorsy person, September is your month.

Nakasendo
Nakasendo
Kumano Kodo Pilgrimage Trail, World Heritage
Kumano Kodo Pilgrimage Trail, World Heritage

The Weather in September: An Honest Guide

You've probably seen September listed as "typhoon season," which sounds pretty dramatic. So let's break down what it's really like.

A Month of Transition

Early September: It can still feel like summer, with warm, humid days and average highs around 27–30°C (81–86°F) in central cities like Tokyo, Osaka, and Kyoto. While the heat lingers, it's already gentler than August, and evenings start to cool.

Late September: This is when the magic happens. Humidity drops, skies clear, and daytime highs settle into a comfortable 22–26°C (72–79°F) range. It's often described as weather perfection—ideal for sightseeing, temple-hopping, and outdoor adventures.

Let's Talk About Typhoons

It's true: September is the peak of Japan's typhoon season. But here's the reality—while typhoons do occur, the chance of a direct hit on the exact place you're visiting is relatively low.

The most common effect travelers experience is a temporary disruption, such as a delayed flight or a day of heavy rain.

The good news is that Japan is incredibly prepared. With world-class infrastructure, advanced warning systems, and resilient transport networks, safety is always prioritized. Even if plans shift, locals (and seasoned travelers) take it in stride.

Bird's Eye View of Tokyo Tower
Bird's Eye View of Tokyo Tower
Dotombori Street Views
Dotombori Street Views

The Asia Odyssey Safety Net

Navigating sudden weather changes can feel stressful—but that's exactly where we come in. At Asia Odyssey Travel, our local experts monitor conditions in real time and adapt your plans seamlessly.

If a storm delays a train or closes an attraction, we'll adjust your itinerary on the spot—so you can stay safe, relaxed, and still get the most out of your journey.

Average September Temperatures (High/Low)

Destination Early March Temp Mid-March Temp Late March Temp
Tokyo 29-22°C (84-72°F) 27-21°C (81-70°F) 25-18°C (77-64°F)
Kyoto 30-22°C (86-72°F) 28-21°C (82-70°F) 26-18°C (79-64°F)
Osaka 31-23°C (88-73°F) 29-22°C (84-72°F) 27-19°C (81-66°F)
Nara 30-22°C (86-72°F) 28-21°C (82-70°F) 26-18°C (79-64°F)
Mount Fuji (Kawaguchiko) 24-16°C (75-61°F) 22-15°C (72-59°F) 20-12°C (68-54°F)
Hakone 27-20°C (81-68°F) 25-19°C (77-66°F) 23-16°C (73-61°F)
Kanazawa 29-22°C (84-72°F) 27-21°C (81-70°F) 25-18°C (77-64°F)
Hiroshima 30-23°C (86-73°F) 28-22°C (82-72°F) 26-19°C (79-66°F)
Nagoya 30-23°C (86-73°F) 28-22°C (82-72°F) 26-19°C (79-66°F)
Sapporo (Hokkaido) 26-18°C (79-64°F) 24-16°C (75-61°F) 20-12°C (68-54°F)
Okinawa (Naha) 31-26°C (88-79°F) 30-26°C (86-79°F) 29-25°C (84-77°F)

Best Places to Visit in Japan in September

Alright, so you're sold on September. Smart move! Now, where should you actually go to make the most of it? Japan has a ton of variety, and what's best depends on the vibe you're looking for. Here are my top picks:

1. Hokkaido: For the Autumn Preview & Harvest Feasts

If you want to get a head start on autumn before anyone else, Hokkaido is your spot.

In mid-to-late September, the vast landscapes of Japan's northern island start their spectacular transformation.

Head to places like Daisetsuzan National Park, and you'll find Japan's very first autumn colors painting the mountainsides.

The weather is perfect for hiking, and it's also harvest season! This means the farmers' markets are overflowing with incredible local produce. It's a foodie and nature-lover's paradise.

Shirahige Falls, Biei
Shirahige Falls, Biei
Shikisai No Oka, Biei
Shikisai No Oka, Biei

2. The Mount Fuji Area: Get That Postcard-Perfect View

Here's a little secret: summer is actually one of the worst times to see Mount Fuji because of all the haze and clouds.

But in September, the air starts to clear up, giving you a much higher chance of getting that breathtaking, crisp, clear view of the iconic volcano.

Head to places like Hakone, Lake Kawaguchiko, or Lake Yamanakako. The scenery is gorgeous, and you'll finally get that photo you've been dreaming of.

3. Kyoto, Osaka & Nara: For Classic Culture Without the Crowds

If your dream trip involves ancient temples, serene gardens, and geishas gliding down cobblestone streets, then Kyoto and Nara are for you.

In September, you won't see autumn colors here yet—instead, the temple gardens are still wonderfully lush and green from the summer.

The moss is vibrant, the bamboo forests are magical, and most importantly, the crowds are so much smaller than in the peak months of October and November.

You can actually find moments of peace at world-famous sites. Plus, you might catch a beautiful tsukimi (moon viewing) festival, which is a truly special cultural experience.

Fushimi Inari Taisha Shrine, Kyoto
Fushimi Inari Taisha Shrine, Kyoto
Kasuga Taisha (Kasuga Grand Shrine), Nara
Kasuga Taisha (Kasuga Grand Shrine), Nara

4. Central Japan & Wakayama: Answer the Call of Adventure

Remember what I said about it being the perfect month for the outdoors? This is where you put it into action. The comfortable temperatures are ideal for tackling some of Japan's most legendary trails.

You can head to the stunning mountains of Nagano in the Japanese Alps for some world-class hiking.

Or, for something truly special, embark on a spiritual journey along the ancient Kumano Kodo pilgrimage trails in Wakayama.

These sacred paths wind through misty forests and tiny, traditional villages—an unforgettable experience.

5. Tokyo: For Unstoppable Urban Energy

Of course, there's always Tokyo! The world-class city that never sleeps is fantastic any time of year, but it's especially enjoyable as the weather cools down in late September.

The slightly lower temperatures make it so much more comfortable to explore the city's endlessly fascinating neighborhoods, from the neon lights of Shinjuku to the trendy streets of Shibuya.

It's a great time to check out new art exhibitions, eat at amazing restaurants, and just soak in the incredible urban energy.

 Hamarikyu Gardens
Hamarikyu Gardens
Divine Trees, Meijin Shrine
Divine Trees, Meijin Shrine

What to Pack for Your September Trip

Packing for September in Japan is a little like preparing for two seasons at once—you need the lightness of summer, but also the comfort of early autumn. The trick is layers and versatility.

Early September: Summer's Encore

If you're coming at the start of the month, you'll still feel that lingering summer heat, especially in central and southern Japan.

Think breathable fabrics—cotton shirts, light skirts or pants, and anything that keeps you cool while sightseeing.

But don't be fooled: evenings in the mountains or overly enthusiastic air-conditioning indoors can get surprisingly chilly. A light jacket or cardigan will save you.

Late September: The Cozy Transition

By the time the month winds down, the weather shifts beautifully. Days are warm but comfortable, while mornings and evenings start to feel crisp.

This is where layering shines: pack a couple of long-sleeved shirts, a cozy sweater, and a medium-weight jacket you can throw on when the temperature dips. You'll love having the flexibility.

Akihabara, Electric Town
Akihabara, Electric Town
Disneyland of Tokyo
Disneyland of Tokyo

All Month Long: The Essentials

No matter when you travel in September, some items are non-negotiable.

Comfortable walking shoes—because Japan's cities and temples beg to be explored on foot.

A lightweight waterproof jacket and a compact travel umbrella—because sudden showers or even a passing typhoon shouldn't derail your trip.

With these basics, you'll be prepared for anything Japan's September skies throw your way.

Practical Tips for September Travel

1. Cost: A Smart Traveler's Sweet Spot

One of the biggest perks of September is value. You're slipping into Japan during a shoulder season, which often means better deals on flights and accommodation compared to the peak months before and after.

That said, late September is gaining popularity—especially as the weather turns near-perfect—so booking early still pays off.

Udon and Fried Rice, Japanese Food
Udon and Fried Rice, Japanese Food
Japanese Cuisine
Japanese Cuisine

2. Food: Savor the Flavors of Early Autumn

September is a foodie's dream.

Keep an eye out for sanma (Pacific saury), the iconic fish that marks the arrival of autumn on Japanese menus—it's smoky, rich, and often grilled to perfection.

If you love seasonal cuisine, this is a delicious time to visit.

3. Booking: Play It Smart, Not Stressed

While Japan is noticeably less crowded than October or November, that doesn't mean you should wing it.

Popular trains, like the shinkansen on weekends, and accommodations in hot spots such as Kyoto or Hakone, can still book up—especially in the last week of the month when travelers start pouring in.

Suggested Itineraries: Your Perfect September Journey

Now that you know September is Japan's golden in-between, the only question left is how you want to experience it. Here are three hand-picked itineraries to inspire your adventure:

 Patchwork Road, Biei
Patchwork Road, Biei
Shirogane Blue Pond, Biei
Shirogane Blue Pond, Biei

1. The Autumn Pioneer (7 Days)

If you want bragging rights as the first to witness Japan's autumn, head north to Hokkaido. This trip is short, sweet, and perfect for nature-lovers who can't wait for fall.

Day Destination Highlights
1 Sapporo Arrive
2 Sapporo Exploration Explore Odori Park, Sapporo Beer Museum
3 Sapporo → Sounkyo Onsen Scenic gorge, waterfalls, hot spring stay
4 Daisetsuzan National Park Hiking amid Japan's first autumn colors
5 Asahikawa Local markets, ramen village, zoo
6 Furano & Biei Patchwork hills, flower fields, countryside drives
7 Sapporo Morning shopping, fly out

2. The Golden Route Classic (10 Days)

For those craving balance, this is the September sweet spot. Start in Tokyo, where the energy of the city feels lighter as the summer crowds fade. Then unwind in Hakone, soaking in hot springs with crisp skies above.

Sagano Scenic Railway, Kyoto
Sagano Scenic Railway, Kyoto
View Mount Fuji and Lake Ashi from Narukawa Art Museum
View Mount Fuji and Lake Ashi from Narukawa Art Museum

End in Kyoto, where temple gardens are still lush and green, but blissfully peaceful compared to October and November. It's the best of Japan, at its most comfortable and unhurried.

Day Destination Highlights
1 Tokyo Arrival, evening stroll in Shinjuku
2 Tokyo Asakusa, Skytree, Akihabara
3 Tokyo Meiji Shrine, Harajuku, Shibuya Crossing
4 Hakone Hot springs, Lake Ashi cruise, Mt. Fuji views
5 Kyoto Kiyomizu-dera, Gion evening walk
6 Kyoto Fushimi Inari, Nishiki Market, Tea ceremony, hidden gardens
7 Kyoto Arashiyama Bamboo Grove, Tenryu-ji Temple
8 Nara (day trip) Todaiji Temple, Nara Deer Park
9 Osaka Namba Yasaka Jinja, Osaka Castle Park, Dotombori
10 Osaka Departure

3. The Culture & Hiking Adventure (10 Days)

Want to go deeper? This two-week journey combines the timeless culture of Osaka and Kyoto with the spiritual serenity of the Kumano Kodo pilgrimage trails. September is perfect for hiking: cooler temperatures, clear air, and trails surrounded by vibrant greenery.

Okuno-in Pilgrimage Path, Koyasan
Okuno-in Pilgrimage Path, Koyasan
Kumano Kodo Pilgrimage Trail, World Heritage
Kumano Kodo Pilgrimage Trail, World Heritage

Add in temple stays and regional cuisine, and you'll experience Japan at a slower, more meaningful pace.

Day Destination Highlights
1 Osaka Arrival, Dotonbori night lights & street food
2 Kyoto Kiyomizu-dera, Gion, Nishiki Market, Tea ceremony
3 Kyoto Arashiyama Bamboo Grove, Tenryu-ji Temple
4 Kyoto → Nara → Osaka Fushimi Inari Taisha Shrine, Todaiji Temple, Nara Park
5 Osaka Namba Yasaka Jinja, Osaka Castle Park,
6 Osaka → Wakayama Tama Densha/Train, Kuroshio Market, Wakayama Castle
7 Wakayama →Shirahama Sandanbeki Cliff, Senjojiki Rock Plateau, Shirarahama Beach, Engetsu Island, Shirahama Onsen
8 Shirahama →Kumano Kodo Hiking on Kumano Kodo (Kumano Nachi Taisha, Seiganto-ji, Nachi Waterfall)
9 Kumano Kodo →Koyasan Mt Koya Hike: Okunoin Temple, Kongobu-ji Temple, Danjo Garan, Koyasan Temple Lodging
10 Koyasan → Osaka Departure

Travel to Japan in September with 株式会社Asia Odyssey Travel Japan

Choosing September means enjoying Japan's sweet spot — fewer crowds, better value, and the first signs of autumn magic. But to make the most of it, you need a partner who knows Japan inside and out.

That's where Asia Odyssey Travel Japan (株式会社Asia Odyssey Travel Japan) comes in. With our Tokyo office, we're always close to the action, ready to provide the latest updates on weather, local events, and travel conditions.

Our professional local drivers and guides ensure your journey is smooth, safe, and deeply authentic — taking you beyond the surface to discover hidden gems.

We don't just plan trips; we provide full-scale Japan travel guide — from weather insights and transport advice to carefully designed maps and itineraries. With us, you'll always feel supported, no matter where your journey takes you.

Travel to Japan in September with Asia Odyssey Travel Japan — your trusted local expert for a seamless, unforgettable adventure.

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